Software
BrMPhylo (phylogenetics from bulk RNA-seq data)
DawnRank: Discovering Personalized Driver Mutations in Cancer
Discrimantive Bag-of-Cells (DBC) (machine learning tool for predicting artibtrary cellular images)
ExPath-reg (image registration software for aligning expanded and unexpanded Expansion Pathology (ExPath))
FISHtrees (FISH-based tumor phylogenetics)
LDGM (estimate the differential gene regulatory network between two biological conditions such as tumor subtypes)
NCIS (A network-assisted co-clustering algorithm to discover cancer subtypes based on gene expression)
SCS_deconvolution (joint bulk and single-cell CNA deconvolution)